Brown University


Neuroscience Department


Donoghue Lab


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Publications

Truccolo, W., Friehs, G.M., Donoghue, J.P., Hochberg, L.R. (2008). Primary Motor Cortex Tuning to Intended Movement Kinematics in Humans with Tetraplegia. Journal of Neuroscience, 28 (5): 1163-1178.

 

Nalatore, H., Truccolo, W., Rangarajan, G. (2007) Fast Robust Pattern Classification Algorithms for Real Time Neuro-Motor Prosthetic Applications. Journal of the Indian Institute of Science, 87 (4): 497-509.

 

Truccolo, W. & Donoghue, J.P. (2007) Nonparametric Modeling of Neural Point Processes via Stochastic Gradient Boosting Regression. Neural Computation, 19(3): 672-705.

 

Knuth, K.H., Shah, A., Truccolo, W., Ding, M., Bressler, S.L., Schroeder, C.E. (2006) Differentially Variable Component Analysis (dVCA): Identifying Multiple Evoked Components Using Trial-to-Trial Variability. Journal of Neurophysiology, 95: 3257-3276.

 

Chen, Y., Bressler, S.L., Knuth, K.H., Truccolo, W., Ding, M. (2006) Stochastic Modeling of Neurobiological Time Series: Power, Coherence, Granger Causality, and Separation of Evoked Responses from Ongoing Activity. Special Edition on Stochastic Dynamics of Neural and Genetic Networks, Editor Andre Longtin. Chaos, 16,  026113 1-8. This paper was also selected to appear in the Virtual Journal of Biological Physics Research, 12 (1).

 

Truccolo, W., Eden, U.T., Fellows, M.R., Donoghue, J.P., Brown, E.N. (2005) A Point Process Framework for Relating Neural Spiking Activity to Spiking History, Neural Ensemble and Extrinsic Covariate Effects. Journal of Neurophysiology, 93, 1074-1089.

 

Eden, U.T., Truccolo, W., Fellows, M.R., Donoghue, J.P., Brown, E.N. (2004) Reconstruction of Hand Movement Trajectories from a Dynamic Ensemble of Spiking Motor Cortical Neurons. Proceedings of the 26th Annual International Conference of the IEEE EMBS, San Francisco, CA.

 

Albo, Z., Viana di Prisco, G. Chen, Y., Rangarajan, G., Truccolo, W., Feng, J., Vertes, R.P., Ding, M. (2004) Is Partial Coherence a Viable Technique for Identifying Generators of Neural Oscillations? Biological Cybernetics, 90, 318-326.

 

Truccolo, W., Knuth, K.H., Shah, A., Schroeder, C., Bressler, S.L., Ding, M. (2003) Estimation of Single-Trial Multi-Component ERPs: differentially Variable Component Analysis (dVCA). Biological Cybernetics, 89, 426-438.

 

Truccolo, W.A., Rangarajan, G., Chen, Y., Ding, M. (2003) Analyzing Stability of Equilibrium Points in Neural Networks: a General Approach. Neural Networks, 16(10), 1453-1460.

 

Sanes, J.N., Truccolo, W. (2003) Motor "Binding": do Functional Assemblies in Primary Motor Cortex have a Role? Neuron, 38 (1): 3-5.

 

Truccolo, W.A., Ding, M., Knuth, K.H., Bressler, S.L. (2002) Trial-to-Trial Variability of Cortical Evoked Responses: Implications for the Analysis of Functional Connectivity. Clinical Neurophysiology, 113, pp. 206–226.

 

Truccolo, W.A., Knuth, K.H., Bressler, S.L., Ding, M. (2002) Bayesian Analysis of Single Trial Cortical Event-Related Components. In: Robert L. Fry (Ed.), Maximum Entropy and Bayesian Methods in Science and Engineering. AIP Conference Proceedings, volume 617, pp 64-73. Melville, NY: American Institute of Physics.

 

Liang, H., Bressler, S.L., Ding, M, Truccolo, W.A., Nakamura, R. (2002) Synchronized Activity in Prefrontal Cortex during Anticipation of Visuomotor Processing. Neuroreport, 13(16), pp. 2011-2015.

 

Truccolo, W. (2002) Statistical Analysis of Dynamic Interdependence Patterns in the Cortex. Ph.D. thesis in Complex Systems. Florida Atlantic University, Center for Complex Systems and Brain Sciences.

 

Truccolo, W.A., Dong, D.W. (2001) Dynamic Temporal Decorrelation: Information Theoretic and Biophysical Model of the Functional Role of the Lateral Geniculate Nucleus (LGN). Neurocomputing, 38-40, pp. 993-1001.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (2001) Variability and Interdependence of Local Field Potentials: Effects of Gain Modulation and Nonstationarity. Neurocomputing, 38-40, pp. 983-992.

 

Kaminski, M., Ding, M., Truccolo, W.A., Bressler, S.L. (2001) Evaluating Causal Relations in Neural Systems: Granger Causality, Direct Transfer Function (DTF) and Statistical Assessment of Significance. Biological Cybernetics, 85, pp. 145-157. 

 

Knuth, K.H., Truccolo, W.A., Bressler, S.L., Ding, M. (2001) Separation of Multiple Evoked Responses using Differential Amplitude and Latency Variability. In: Sejnowski, T.J. (Ed.), Proceedings of the 3rd International Conference on Independent Component Analysis and Blind Signal Separation, December, 2001, San Diego, California, USA.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (2000) Stability Constraints for Oscillatory Neural Networks. Neurocomputing, 32-33, pp. 585-589.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (2000) Dynamical Analysis of an Oscillatory Cortical Neural Network. In: Amari et al (Eds). Neural Networks. IJCNN 2000, Proceedings of the IEEE-INNS-ENNS International Joint Conference on  ,Volume: 6 , 24-27, pp. 434 – 439.

 

Truccolo, W., Dong, D.W. (2000) Dynamic Temporal Decorrelation: Information Theoretic and Biophysical Model of the Functional Role of the Lateral Geniculate Nucleus (LGN). Investigative Ophthalmology & Visual Science, 41 (4): 259B259, Suppl. S MAR 15 2000.

 


Invited Talks & Abstracts

Truccolo, W. (2008) Stochastic Models for Computational and Encoding Analyses of Neural Systems. (Invited Talk) Program in Neuroscience and Cognitive Science (NACS) at the University of Maryland.

Truccolo, W., Friehs, G.M., Donoghue, J.P., Hochberg, L.R. (2007) MI Tuning to Intended Kinematics in Humans with Tetraplegia. Abstr. No. 517.5, Society for Neuroscience, Washington, DC.

 

King, B., Truccolo, W., Friehs, G.M., Stein, J., Donoghue, J.P., Hochberg, L.R. (2007) Motor Cortex Local Field Potentials and Multi-Unity Activity during Intended Movements in Humans with Tetraplegia. Abstr. No. 517.15, Society for Neuroscience, Washington, DC.

 

Truccolo, W. (2007) Stochastic Modeling of Neural Point Processes: Theory. (Invited Talk)  Department of Applied Mathematics (ESAM) at Northwestern University.

 

Truccolo, W. (2007) Stochastic Modeling of Neural Point Processes: Applications. (Invited Talk)  Rehabilitation Institute of Chicago and Department of Physiology at Northwestern University.

 

Truccolo, W. & Donoghue, J.P. (2006) Non-Parametric Modeling of Neural Point Processes: Stochastic Gradient Boosting Regression and Bayesian P-Splines. COSYNE: Computational and Systems Neuroscience, Salt Lake City, March 2006.

 

Truccolo, W., Vargas, C., Philips, B., Donoghue, J.P. (2005) M1-5d Statistical Interdependencies via Dual Multi-Electrode Array Recordings. Soc. Neurosci. Abstr., Prog. No. 981.13, Washington, DC.

 

Truccolo, W., Vargas, C., Philip, B., Fellows, M.R., Donoghue, J.P. (2005) Simultaneous Multielectrode Recording of Primary Motor (MI) and Parietal (5d) Cortices during Reaching: Analysis of Statistical Interactions. The Society for the Neural Control of Movement, Key Biscayne, Florida.

 

Truccolo, W., Fellows, M.R., Eden, U.T., Brown, E.N, Donoghue, J.P. (2004) Primary motor (MI) and parietal (5d) coordination during reaching: point process and LFP models. Society for Neuroscience Annual Meeting, Abstr., Prog. No. 421.1,  San Diego.

 

Wu, W., Truccolo, W., Saleh, M., Mumford, D., Donoghue, J.P. (2004) Decoding using Fast Oscillations in Local Field Potentials and Neural Firing during Instructed Delay in a Center-Out Reaching Task. Computational Neuroscience Meeting, July 18-10m Baltimore, MD.

 

Ding, M. Rangarajan, G. Truccolo, W., Chen, Y., Donoghue, J.P. (2004) Spatiotemporal LFP Activity in macaque motor cortex during instructed delay.  Statistical Analysis of Neuronal Data. Organizers: Emery N. Brown (Harvard University) and Robert Kass (Carnegie Mellon University), May 21-22, Pittsburgh.

 

Truccolo, W., Eden, U.T., Fellows, M.R., Donoghue, J.P., Brown, E.N. (2003) Multivariate conditional intensity models for MI Spiking Activity. Society for Neuroscience Annual Meeting, Abstr., Prog. No. 607.11, New Orleans.

 

Eden, U.T., Truccolo, W., Ergun, A., Fellows, M.R., Donoghue, J.P., Brown, E.N. (2003) Exact and approximate point process filters for adaptive neural encoding and decoding. Society for Neuroscience Annual Meeting, Abstr., Prog. No. 429.2, New Orleans.

 

Rangarajan, G., Truccolo, W., Chen, Y., Donoghue, J.P., Ding, M.D. (2003) Spatiotemporal neural activity in macaque motor cortex during working memory and movement execution. Society for Neuroscience Annual Meeting, Abstr., Prog. No. 708.10 , New Orleans.

 

Knuth, K.H., Shah, A., Truccolo, W., Ding, M.D., Bressler, S.L., Schroeder, C.E. (2003) Differentially Variable Component Analysis: dVCA. A New Tool for Understanding Brain Responses. Society for Neuroscience Annual Meeting, Abstr., Prog. No. 430.19,  New Orleans.

 

Truccolo, W.A., Saleh, M., Hatsopoulos, N., Donoghue, J.P. (2002) Relationships between LFPs, Spike Activity and Movement Direction in Primary Motor Cortex. Society for Neuroscience Annual Meeting, Orlando.

 

Knuth, K.H., Clanton, S.T., Shah, A.S., Truccolo, W.A., Ding, M., Bressler, S.L., Trejo, L.J., Schroeder, C.E. (2002) Multiple Component Event-Related Potential (mcERP) Estimation. Society for Neuroscience Annual Meeting, Orlando.

 

Shah, A.S., Knuth, K.H., Truccolo, W.A., Mehta, A.D., Fu, K.G., Johnston, T.A., Ding, M., Bressler, S.L., Schroeder, C.E. (2002) Estimating Single-Trial Responses in EEG. Society for Neuroscience Annual Meeting, Orlando. 

 

Knuth, K.H., Shah, A.S., Truccolo, W.A., Ding, M, Bressler, S.L., Schroeder, C.E. (2002) Estimating the Single-Trial Characteristics of Event-Related Responses: Evaluation of the MCERP Algorithm. Dynamical Neuroscience Satellite Symposium, Society for Neuroscience Annual Meeting, Orlando.

 

Truccolo, W.A., Knuth, K.H., Ding, M., Bressler, S.L. (2001) Bayesian Estimation of Amplitude, Latency and Waveform of Single Trial Cortical Evoked Components. International Workshop on Bayesian Inference and Maximum Entropy Methods in Science  and Engineering (MaxEnt, August 4-9, 2001), Johns Hopkins University, Baltimore.

 

Knuth, K.H., Truccolo, W.A., Bressler, S.L., Ding, M. (2001) Separation of Multiple Evoked Responses Using Differential Amplitude and Latency Variability. 3rd International Conference on Independent Component Analysis and Blind Signal Separation, December 9-13, 2001, San Diego.

 

Truccolo, W.A., Knuth, K.H., Ding, M., Bressler, S.L. (2001) Bayesian Estimation of Single Trial Cortical Evoked Potential Components: Applications to the Analysis of Functional Connectivity. Society for Neuroscience Annual Meeting, San Diego.

 

Albo, Z., Viana Di Prisco, G., Truccolo, W.A., Vertes, R.P., Ding. M. (2001) A Study of Neural Interactions Within the Limbic System using Partial Coherence and Direct Transfer Functions Analysis. Society for Neuroscience Annual Meeting, San Diego.

 

Knuth, K.H., Truccolo, W.A., Shah, A.S., Ding, M., Bressler, S.L., Schroeder, C.E. (2001) Facing Up to Trial-to-Trial Variability of Evoked Responses. Society for Neuroscience Annual Meeting, San Diego.

 

Shah, A.S., Knuth, K.H., Mehta, A.D., Fu, K.G., Johnston, T.A., Dias, E.C., Truccolo, W.A., Ding, M., Bressler, S.L., Schroeder, C.E. (2001) Functional Connectivity between Visual Structures in Behaving Monkeys. Society for Neuroscience Annual Meeting, San Diego.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (2000) Variability of Cortical Evoked Responses: Implications for the Analysis of Functional Connectivity. Society for Neuroscience Annual Meeting, New Orleans.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (2000) Dynamical Analysis of an Oscillatory Cortical Neural Network. International Joint Conference on Neural Networks (IJCNN), Como, Italy.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (2000) On the Variability of Cortical Evoked Responses: Implications for the Correlation and Spectral Coherence Analysis of Local Field Potentials. Computational Neuroscience Meeting, Brugge, Belgium.

 

Truccolo, W.A. and Dong, D.W. (2000) Dynamic Temporal Decorrelation: Information Theoretic and Biophysical Model of the Functional Role of the Lateral Geniculate Nucleus (LGN). Computational Neuroscience Meeting, Brugge, Belgium.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (2000) Dynamics of Oscillatory Neural Networks. World Conference on Systemics, Cybernetics, and Informatics, Orlando.

 

Truccolo, W.A. and Dong, D.W. (2000) Dynamic Temporal Decorrelation: Information Theoretic and Biophysical Model of the Functional Role of the Lateral Geniculate Nucleus (LGN). ARVO (The Association for Research in Vision and Ophthamology), Annual Meeting.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (1999) Stability of Oscillatory Neural Networks. Dynamic Neuroscience VII, Integration Across Multiple Imaging Modalities, Neuroscience Meeting Satellite Symposium, NIHM, Boca Raton.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (1999) Variability of Cortical Evoked Responses: Implications for Cross-Correlation and Coherence Measures. Dynamic Neuroscience VII, Integration Across Multiple Imaging Modalities, Neuroscience Meeting Satellite Symposium, NIHM, Boca Raton.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (1999) Dynamical Analysis of Oscillatory Neural Networks. 5Th Experimental Chaos Conference, Orlando.

 

Truccolo, W.A., Ding, M., Bressler, S.L. (1999) Dynamical Analysis of a Generic Cortical Area Model. Computational Neuroscience Meeting, Pittsburg. 

 

Truccolo, W.A., Ding, M., Bressler, S.L. (1998) Information Processing in a Generic Cortical Area Model. New England Complex System Conference, Nashua.